A phylogenetic re-evaluation of Phyllosticta (Botryosphaeriales)
Identifieur interne : 000F72 ( Main/Exploration ); précédent : 000F71; suivant : 000F73A phylogenetic re-evaluation of Phyllosticta (Botryosphaeriales)
Auteurs : S. Wikee [Thaïlande] ; L. Lombard [Pays-Bas] ; C. Nakashima [Japon] ; K. Motohashi [Japon] ; E. Chukeatirote [Thaïlande] ; R. Cheewangkoon [Thaïlande] ; E. H. C. Mckenzie [Nouvelle-Zélande] ; K. D. Hyde [Thaïlande] ; P. W. Crous [Pays-Bas]Source :
- Studies in Mycology [ 0166-0616 ] ; 2013.
Abstract
Url:
DOI: 10.3114/sim0019
PubMed: 24302788
PubMed Central: 3825230
Affiliations:
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Lombard</name><affiliation wicri:level="1"><nlm:aff id="A3"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation></author><author><name sortKey="Nakashima, C" sort="Nakashima, C" uniqKey="Nakashima C" first="C." last="Nakashima">C. Nakashima</name><affiliation wicri:level="1"><nlm:aff id="A4"> Graduate School of Bioresources, Mie University, Kurima-machiya 1577, Tsu, Mie 514-8507, Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea> Graduate School of Bioresources, Mie University, Kurima-machiya 1577, Tsu, Mie 514-8507</wicri:regionArea><wicri:noRegion>Mie 514-8507</wicri:noRegion></affiliation></author><author><name sortKey="Motohashi, K" sort="Motohashi, K" uniqKey="Motohashi K" first="K." last="Motohashi">K. Motohashi</name><affiliation wicri:level="1"><nlm:aff id="A5"> Electron Microscope Center, Tokyo University of Agriculture, Sakuragaoka 1-1-1, Setagaya, Tokyo 156-8502, Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea> Electron Microscope Center, Tokyo University of Agriculture, Sakuragaoka 1-1-1, Setagaya, Tokyo 156-8502</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement></placeName></affiliation></author><author><name sortKey="Chukeatirote, E" sort="Chukeatirote, E" uniqKey="Chukeatirote E" first="E." last="Chukeatirote">E. Chukeatirote</name><affiliation wicri:level="1"><nlm:aff id="A1"> School of Science, Mae Fah Luang University, Chiangrai 57100, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea> School of Science, Mae Fah Luang University, Chiangrai 57100</wicri:regionArea><wicri:noRegion>Chiangrai 57100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A2"> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiangrai 57100, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiangrai 57100</wicri:regionArea><wicri:noRegion>Chiangrai 57100</wicri:noRegion></affiliation></author><author><name sortKey="Cheewangkoon, R" sort="Cheewangkoon, R" uniqKey="Cheewangkoon R" first="R." last="Cheewangkoon">R. Cheewangkoon</name><affiliation wicri:level="1"><nlm:aff id="A6"> Department of Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea> Department of Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200</wicri:regionArea><wicri:noRegion>Chiang Mai 50200</wicri:noRegion></affiliation></author><author><name sortKey="Mckenzie, E H C" sort="Mckenzie, E H C" uniqKey="Mckenzie E" first="E. H. C." last="Mckenzie">E. H. C. Mckenzie</name><affiliation wicri:level="1"><nlm:aff id="A7"> Landcare Research, Private Bag 92170, Auckland Mail Centre, Auckland 1142, New Zealand</nlm:aff><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea> Landcare Research, Private Bag 92170, Auckland Mail Centre, Auckland 1142</wicri:regionArea><wicri:noRegion>Auckland 1142</wicri:noRegion></affiliation></author><author><name sortKey="Hyde, K D" sort="Hyde, K D" uniqKey="Hyde K" first="K. D." last="Hyde">K. D. Hyde</name><affiliation wicri:level="1"><nlm:aff id="A1"> School of Science, Mae Fah Luang University, Chiangrai 57100, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea> School of Science, Mae Fah Luang University, Chiangrai 57100</wicri:regionArea><wicri:noRegion>Chiangrai 57100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A2"> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiangrai 57100, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiangrai 57100</wicri:regionArea><wicri:noRegion>Chiangrai 57100</wicri:noRegion></affiliation></author><author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><affiliation wicri:level="1"><nlm:aff id="A3"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:aff id="A8"> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht</wicri:regionArea><orgName type="university">Université d'Utrecht</orgName><placeName><settlement type="city">Utrecht</settlement><region nuts="2">Utrecht (province)</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="A9"> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea><wicri:noRegion>6708 PB Wageningen</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24302788</idno><idno type="pmc">3825230</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3825230</idno><idno type="RBID">PMC:3825230</idno><idno type="doi">10.3114/sim0019</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">001305</idno><idno type="wicri:Area/Pmc/Curation">001303</idno><idno type="wicri:Area/Pmc/Checkpoint">000B65</idno><idno type="wicri:Area/Ncbi/Merge">001524</idno><idno type="wicri:Area/Ncbi/Curation">001524</idno><idno type="wicri:Area/Ncbi/Checkpoint">001524</idno><idno type="wicri:doubleKey">0166-0616:2013:Wikee S:a:phylogenetic:re</idno><idno type="wicri:Area/Main/Merge">000F77</idno><idno type="wicri:Area/Main/Curation">000F72</idno><idno type="wicri:Area/Main/Exploration">000F72</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">A phylogenetic re-evaluation of <italic>Phyllosticta</italic> (<italic>Botryosphaeriales</italic>)</title><author><name sortKey="Wikee, S" sort="Wikee, S" uniqKey="Wikee S" first="S." last="Wikee">S. Wikee</name><affiliation wicri:level="1"><nlm:aff id="A1"> School of Science, Mae Fah Luang University, Chiangrai 57100, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea> School of Science, Mae Fah Luang University, Chiangrai 57100</wicri:regionArea><wicri:noRegion>Chiangrai 57100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A2"> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiangrai 57100, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiangrai 57100</wicri:regionArea><wicri:noRegion>Chiangrai 57100</wicri:noRegion></affiliation></author><author><name sortKey="Lombard, L" sort="Lombard, L" uniqKey="Lombard L" first="L." last="Lombard">L. Lombard</name><affiliation wicri:level="1"><nlm:aff id="A3"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation></author><author><name sortKey="Nakashima, C" sort="Nakashima, C" uniqKey="Nakashima C" first="C." last="Nakashima">C. Nakashima</name><affiliation wicri:level="1"><nlm:aff id="A4"> Graduate School of Bioresources, Mie University, Kurima-machiya 1577, Tsu, Mie 514-8507, Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea> Graduate School of Bioresources, Mie University, Kurima-machiya 1577, Tsu, Mie 514-8507</wicri:regionArea><wicri:noRegion>Mie 514-8507</wicri:noRegion></affiliation></author><author><name sortKey="Motohashi, K" sort="Motohashi, K" uniqKey="Motohashi K" first="K." last="Motohashi">K. Motohashi</name><affiliation wicri:level="1"><nlm:aff id="A5"> Electron Microscope Center, Tokyo University of Agriculture, Sakuragaoka 1-1-1, Setagaya, Tokyo 156-8502, Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea> Electron Microscope Center, Tokyo University of Agriculture, Sakuragaoka 1-1-1, Setagaya, Tokyo 156-8502</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement></placeName></affiliation></author><author><name sortKey="Chukeatirote, E" sort="Chukeatirote, E" uniqKey="Chukeatirote E" first="E." last="Chukeatirote">E. Chukeatirote</name><affiliation wicri:level="1"><nlm:aff id="A1"> School of Science, Mae Fah Luang University, Chiangrai 57100, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea> School of Science, Mae Fah Luang University, Chiangrai 57100</wicri:regionArea><wicri:noRegion>Chiangrai 57100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A2"> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiangrai 57100, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiangrai 57100</wicri:regionArea><wicri:noRegion>Chiangrai 57100</wicri:noRegion></affiliation></author><author><name sortKey="Cheewangkoon, R" sort="Cheewangkoon, R" uniqKey="Cheewangkoon R" first="R." last="Cheewangkoon">R. Cheewangkoon</name><affiliation wicri:level="1"><nlm:aff id="A6"> Department of Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea> Department of Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200</wicri:regionArea><wicri:noRegion>Chiang Mai 50200</wicri:noRegion></affiliation></author><author><name sortKey="Mckenzie, E H C" sort="Mckenzie, E H C" uniqKey="Mckenzie E" first="E. H. C." last="Mckenzie">E. H. C. Mckenzie</name><affiliation wicri:level="1"><nlm:aff id="A7"> Landcare Research, Private Bag 92170, Auckland Mail Centre, Auckland 1142, New Zealand</nlm:aff><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea> Landcare Research, Private Bag 92170, Auckland Mail Centre, Auckland 1142</wicri:regionArea><wicri:noRegion>Auckland 1142</wicri:noRegion></affiliation></author><author><name sortKey="Hyde, K D" sort="Hyde, K D" uniqKey="Hyde K" first="K. D." last="Hyde">K. D. Hyde</name><affiliation wicri:level="1"><nlm:aff id="A1"> School of Science, Mae Fah Luang University, Chiangrai 57100, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea> School of Science, Mae Fah Luang University, Chiangrai 57100</wicri:regionArea><wicri:noRegion>Chiangrai 57100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A2"> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiangrai 57100, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiangrai 57100</wicri:regionArea><wicri:noRegion>Chiangrai 57100</wicri:noRegion></affiliation></author><author><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><affiliation wicri:level="1"><nlm:aff id="A3"> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht</wicri:regionArea><wicri:noRegion>3584 CT Utrecht</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:aff id="A8"> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht</wicri:regionArea><orgName type="university">Université d'Utrecht</orgName><placeName><settlement type="city">Utrecht</settlement><region nuts="2">Utrecht (province)</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="A9"> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands</nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea> Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen</wicri:regionArea><wicri:noRegion>6708 PB Wageningen</wicri:noRegion></affiliation></author></analytic><series><title level="j">Studies in Mycology</title><idno type="ISSN">0166-0616</idno><idno type="eISSN">1872-9797</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="P6"><italic>Phyllosticta</italic> is a geographically widespread genus of plant pathogenic fungi with a diverse host range. This study redefines <italic>Phyllosticta</italic>, and shows that it clusters sister to the <italic>Botryosphaeriaceae</italic> (<italic>Botryosphaeriales</italic>, <italic>Dothideomycetes</italic>), for which the older family name <italic>Phyllostictaceae</italic> is resurrected. In moving to a unit nomenclature for fungi, the generic name <italic>Phyllosticta</italic> was chosen over <italic>Guignardia</italic> in previous studies, an approach that we support here. We use a multigene DNA dataset of the ITS, LSU, ACT, TEF and GPDH gene regions to investigate 129 isolates of <italic>Phyllosticta</italic>, representing about 170 species names, many of which are shown to be synonyms of the ubiquitous endophyte <italic>P. capitalensis</italic>. Based on the data generated here, 12 new species are introduced, while epitype and neotype specimens are designated for a further seven species. One species of interest is <italic>P. citrimaxima</italic> associated with tan spot of <italic>Citrus maxima</italic> fruit in Thailand, which adds a fifth species to the citrus black spot complex. Previous morphological studies lumped many taxa under single names that represent complexes. In spite of this <italic>Phyllosticta</italic> is a species-rich genus, and many of these taxa need to be recollected in order to resolve their phylogeny and taxonomy.</p><sec id="S1"><title>Taxonomic novelties:</title><p id="P7"><bold>New species</bold> - <italic>Phyllosticta abieticola</italic> Wikee & Crous, <italic>P. aloeicola</italic> Wikee & Crous, <italic>P. citrimaxima</italic> Wikee, Crous, K.D. Hyde & McKenzie, <italic>P. leucothoicola</italic> Wikee, Motohashi & Crous, <italic>P. mangifera-indica</italic> Wikee, Crous, K.D. Hyde & McKenzie, <italic>P. neopyrolae</italic> Wikee, Motohashi, Crous, K.D. Hyde & McKenzie, <italic>P. pachysandricola</italic> Wikee, Motohashi & Crous, <italic>P. paxistimae</italic> Wikee & Crous, <italic>P. podocarpicola</italic> Wikee, Crous, K.D. Hyde & McKenzie, <italic>P. rhaphiolepidis</italic> Wikee, C. Nakash. & Crous, <italic>P. rubra</italic> Wikee & Crous, <italic>P. vacciniicola</italic> Wikee, Crous, K.D. Hyde & McKenzie; <bold>New combinations</bold> - <italic>P. foliorum</italic> (Sacc.) Wikee & Crous, <italic>P. philoprina</italic> (Berk. & M.A. Curtis) Wikee & Crous; <bold>Epitypifications (basionyms)</bold> - <italic>P. concentrica</italic> Sacc., <italic>P. cussoniae</italic> Cejp, <italic>P. owaniana</italic> G. Winter; <bold>Neotypifications (basionyms)</bold> - <italic>Phyllosticta cordylinophila</italic> P.A. Young, <italic>Physalospora gregaria</italic> var. <italic>foliorum</italic> Sacc., <italic>Sphaeropsis hypoglossi</italic> Mont., <italic>Sphaeropsis minima</italic> Berk. & M.A. Curtis.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Aa, Ha Van Der" uniqKey="Aa H">HA van der Aa</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Aa, Ha Van Der" uniqKey="Aa H">HA van der Aa</name></author><author><name sortKey="Vanev, S" uniqKey="Vanev S">S Vanev</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Allescher, A" uniqKey="Allescher A">A Allescher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Arx, Ja Von" uniqKey="Arx J">JA von Arx</name></author><author><name sortKey="Muller, E" uniqKey="Muller E">E Müller</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Aveskamp, M" uniqKey="Aveskamp M">M 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Wikee</name></noRegion><name sortKey="Cheewangkoon, R" sort="Cheewangkoon, R" uniqKey="Cheewangkoon R" first="R." last="Cheewangkoon">R. Cheewangkoon</name><name sortKey="Chukeatirote, E" sort="Chukeatirote, E" uniqKey="Chukeatirote E" first="E." last="Chukeatirote">E. Chukeatirote</name><name sortKey="Chukeatirote, E" sort="Chukeatirote, E" uniqKey="Chukeatirote E" first="E." last="Chukeatirote">E. Chukeatirote</name><name sortKey="Hyde, K D" sort="Hyde, K D" uniqKey="Hyde K" first="K. D." last="Hyde">K. D. Hyde</name><name sortKey="Hyde, K D" sort="Hyde, K D" uniqKey="Hyde K" first="K. D." last="Hyde">K. D. Hyde</name><name sortKey="Wikee, S" sort="Wikee, S" uniqKey="Wikee S" first="S." last="Wikee">S. Wikee</name></country><country name="Pays-Bas"><noRegion><name sortKey="Lombard, L" sort="Lombard, L" uniqKey="Lombard L" first="L." last="Lombard">L. Lombard</name></noRegion><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name><name sortKey="Crous, P W" sort="Crous, P W" uniqKey="Crous P" first="P. W." last="Crous">P. W. Crous</name></country><country name="Japon"><noRegion><name sortKey="Nakashima, C" sort="Nakashima, C" uniqKey="Nakashima C" first="C." last="Nakashima">C. Nakashima</name></noRegion><name sortKey="Motohashi, K" sort="Motohashi, K" uniqKey="Motohashi K" first="K." last="Motohashi">K. Motohashi</name></country><country name="Nouvelle-Zélande"><noRegion><name sortKey="Mckenzie, E H C" sort="Mckenzie, E H C" uniqKey="Mckenzie E" first="E. H. C." last="Mckenzie">E. H. C. Mckenzie</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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|clé= PMC:3825230
|texte= A phylogenetic re-evaluation of Phyllosticta (Botryosphaeriales)
}}
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HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:24302788" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a OrangerV1
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